I am a computational biologist interested in applications of machine learning in plant genomic and molecular data 

Research Areas:
Systems Biology, Computational Biology


  1. Chirag Gupta and Andy Pereira. Recent Advances in Gene Function Prediction Using Context Specific Coexpression Networks in Plants. F1000 Research (F1000 Faculty Rev.), 2019
  2. Chirag Gupta , Arjun Krishnan, Eva Collakova, Pawel Wolinski, Andy Pereira. SANe: The Seed Active Network For Discovering Transcriptional Regulatory Programs of Seed Development. bioRxiv, 2018 
  3. Arjun Krishnan, Chirag Gupta , Madana Ambavaram, Andy Pereira. RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response. Front. Plant Sci., 2017
  4.  Venkategowda Ramegowda, Upinder Singh, Gill Palaiyur, Nanjappan Sivalingam, Aarti Gupta, Chirag Gupta , Geetha Govind Karaba, N. Nataraja, A Pereira, Makarla Udayakumar, Kirankumar S. Mysore, Muthappa Senthil-Kumar. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Scientific Reports, 2017
  5.  Venketagowda Ramegowda, Supratim Basu, Chirag Gupta, Andy Pereira. Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK. Plant Signaling and Behavior, 2015
Current Affiliations
Experience & Education