I am a Science Informatician at CyVerse (University of Arizona), a life sciences cyberinfrastructure funded by the National Science Foundation (NSF). At CyVerse, I scientifically interact with biologists, bioinformaticians, programming teams and other members of CyVerse team as well as coordinate development cross projects, and facilitate integration and cross-communication.
Research Areas: Applied Plant Biology, Computational Biology, Genomics, Molecular Biology
Hazekamp, Nicholas L., Upendra K Devisetty, Nirav Merchant and Douglas Thain. “MAKER as a Service: Moving HPC applications to Jetstream Cloud.” (2018).
RJ Cody Markelz, Michael F Covington, Marcus T Brock, Upendra K Devisetty, Daniel J Kliebenstein, Cynthia Weinig, Julin N Maloof (2017). "Using RNA-seq for genomic scaffold placement, correcting assemblies, and genetic map creation in a common Brassica rapa mapping population" G3. 1(13).
Blake Joyce, Asher K Haug-Baltzell, Jonathan P Hulvey, Fiona McCarthy, Upendra Kumar Devisetty, Eric Lyons (2017). "Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved (Non-model) Organisms" JOVE. 1(12).
Wang, Z, R. Yang, U. Devisetty, J. Maloof, Y. Zuo, J. Li, Y. Shen, J. Zhao, M. Bao and G. Ning (2016). "The divergence of flowering time modulated by FT/TFL1 is independent to their interaction and binding activities" Frontiers in Plant science. 1(11).
Andrew D. Nelson*, Upendra K. Devisetty*, Kyle Palos, Asher K. Haug-Baltzell, Eric Lyons, Mark A. Beilstein (2017). "Evolinc: a comparative transcriptomics and genomics pipeline for quickly identifying sequence conserved lincRNAs for functional analysis" Frontiers in Genetics. 1(10).
Upendra Kumar Devisetty, Kathleen Kennedy, Paul Sarando, Nirav Merchant, Eric Lyons (2016). "Bringing your tools to CyVerse Discovery Environment using Docker" F1000. 1(8).
Andrew D. L. Nelson, Evan S. Forsythe, Upendra K. Devisetty, David S. Clausen, Asher K. Haug-Batzell, Ari M. R. Meldrum,* Michael R. Frank, Eric Lyons, and Mark A. Beilstein (2016). "A Genomic Analysis of Factors Driving lincRNA Diversification: Lessons from Plants" G3. 1(9).
Marcus T. Brock, Lauren K. Lucas, Nicholas A. Anderson, Matthew J . Rubin, R. J. Cody Markelez, Michael F. Covington, Upendra K. Devisetty, Clint Chappel,‡ Julin N. Maloof and Cynthia Weing (2015). "Genetic architecture, biochemical underpinnings, and ecological impact of floral UV patterning" Molecular Ecology. 1(7).
Robert L. Baker, Wen Fung Leong, Marcus T. Brock, Robert C. Markelz, Mike Covington, Upendra K. Devisetty, Julin Maloof, Stephen Welch, and Cynthia Weinig (2015). "Modeling leaf development enables quantitative trait mapping mapping of novel loci and reveals independent genetic modules for leaf size and shape in Brassica rapa" New Phytology. 1(6).
Kazunari Nozue, An Tat, Upendra Kumar Devisetty, Matt Robinson, Maxwell Mumbach, Yasunori Ichihashi, Saradadevi Lekkala, and Julin N. Maloof (2015). "Shade Avoidance Components and Pathways in Adult Plants Revealed by Phenotypic Profiling" PLOS GENETICS. 1(5).
Upendra Kumar Devisetty, Mike Covington, An V. Tat and Julin N. Maloof (2014). "Using deep RNA-Seq for polymorphism detection and improving genome annotation of Brassica rapa " G3. 1(4).
Daniel Koenig, José M. Jiménez-Gómez, Seisuke Kimura, Daniel Fulop, Daniel H. Chitwood, Lauren R. Headland, Ravi Kumar, Michael F. Covington, Upendra Kumar Devisetty, An V. Tat, Takayuki Tohge, Anthony Bolger, Korbinian Schneeberger, Stephan Ossowski, Christa Lanz, Guangyan Xiongi, Mallorie Taylor-Teeples, Siobhan M. Bradya,j, Markus Pauly, Detlef Weigel, Björn Usadel, Alisdair R. Fernie, Jie Peng, Neelima R. Sinha, and Julin N. Maloof (2015). "Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato" PNAS. 1(3).
Polly Yingshan Hsu, Upendra K Devisetty, Stacey L Harmer (2013). "Accurate timekeeping is controlled by a cycling activator in Arabidopsis" eLIFE. 1(2).
Upendra Kumar Devisetty, Katie Mayes and Sean Mayes (2010). "The RAD51 and DMC1 homoeologous genes of bread wheat: cloning, molecular characterization and expression analysis" BMC Research Notes. 1(1).